Non-redundant Zebrafish cDNA database

A non-redundant database of 25,102 unique predicted and known genes can be found here.

 

A description of this database can be found here.

 

In 2016, a substantial update was made to this database.  All transcripts not labeled mRNA (e.g. non-coding, micro, etc.) were removed.  Genes from the ensembl database were added.  A tweak was made in the method of identifying redundancy that removed more transcripts.  The new database contains 27,012 transcripts.

 

The new database (with largely old names intact) is here.

 

A table that attempts to reconcile database names with current NCBI names as well as ensembl names can be found here.

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