Mitra Lab has a new preprint

The Mitra Lab has a new preprint, “Measuring Transcription Factor Binding and Gene Expression using Barcoded Self-Reporting Transposon Calling Cards and Transcriptomes.” Matt Lalli, a former postdoc in the Mitra Lab, is lead author on the preprint....

Mitra Lab has paper accepted in Bioinformatics

The Mitra Lab recently had a paper accepted in Bioinformatics, “The qBED track: a novel genome browser visualization for point processes.” Arnav Moudgil, a graduate student in the Mitra Lab, is first author. The Wang Lab contributed to the paper. Ting...

Mitra Lab has paper accepted in Genome Research

The Mitra Lab recently had a paper accepted in Genome Research, “High-throughput single-cell functional elucidation of neurodevelopmental disease-associated genes reveals convergent mechanisms altering neuronal differentiation.” Matt Lalli, a postdoc in...

Mitra Lab publishes paper in Cell

The Mitra Lab recently published a paper in Cell, “Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cell.” Arnav Moudgil, a graduate student in the Mitra Lab, is first author on the paper....

Two graduate students join the Mitra Lab

Pam Recio and Lori Llaci have joined the Mitra Lab as graduate students.  Pam received a Bachelor of Science in Molecular Biology from California State University Monterey Bay. Her undergraduate research involved assessing the role that specific genes-LAC1 and LAG1-...

Dougherty and Mitra Labs publish paper in PNAS

The Dougherty and Mitra Labs had a paper published in PNAS, “A viral toolkit for recording transcription factor–DNA interactions in live mouse tissues.” Alex Cammack, a graduate student in the Miller Lab who recently defended, is first author on the paper....

Mitra Lab has new paper published in Nucleic Acids Research

The Mitra Lab has a new paper published in Nucleic Acids Research, “Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays.” Jiayue Liu, a graduate student in the lab, is first author on the paper....

Mitra Lab welcomes new lab members

The Mitra Lab recently welcomed new lab members. India Reiss joined the lab as graduate student, Josh Langmade joined the lab as a staff scientist, and Jess Cohn joined the lab as a postdoctoral research associate. Welcome to all!

Mitra Lab postdoc publishes paper in PNAS

Christian Shively, Ph.D., a postdoc in the Mitra Lab, recently had a paper published in PNAS. The paper, “Homotypic cooperativity and collective binding are determinants of bHLH specificity and function,” appears in a July 24, 2019 issue of the journal....

Mitra lab postdoc has paper accepted by Cell Reports

Denis Avey, Ph.D., a postdoc in the Mitra and Milbrandt labs, had a paper accepted recently by Cell Reports. The paper, “Single cell RNAseq uncovers a robust transcriptional response to morphine by glia,” looks at the morphine-dependent transcriptional...